{1} MIxS Active Tickets (5 matches)

Welcome to MixS Tracker

This is a feature request and bug tracker for MIGS/MIMS/MIMARKS=MIxS checklists of the Genomic Standards Consortium.

MIGS/MIMS (Minimum Information About a (Meta)Genome Sequence) outlines a conceptual structure for extending the core information that has been traditionally captured by the INSDC (DDBJ/EMBL/Genbank) to describe genomic and metagenomic sequences. More information on MIGS/MIMS can be found on the MIGS/MIMS homepage.

MIMARKS (Minimum Information about a MARKer gene Sequence), is based on the MIGS/MIMS specification. It is a consensus on an ideal and minimum set of contextual data that should be reported for marker genes. The MIMARKS standard extends the MIGS/MIMS specification for genomes and metagenomes by adding two new report types, a “MIMARKS-survey” and a “MIMARKS-specimen”, the former being the checklist of choice for uncultured diversity marker gene surveys, the latter designed for marker gene sequences obtained from cultured organisms or any material identifiable via voucher specimens. More information can be found on the MIMARKS homepage.

MIxS checklists, are ‘living checklists’ and not final specifications. Therefore, further developments, extensions, and enhancements will be recognized via this tracker page.

The final decisions about implementation of features, enhancements and defects will be concluded by working groups within the Genomics Standards Consortium. Improved versions of the checklists, if necessitated, will be released annually, while preserving the validity of former versions.

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Reporting enhancements/defects

  • Please provide an informative, yet concise summary to your ticket
  • Description should be used to give more detailed information about the suggested enhancements/defect, i.e. I would like to have xyz field in the a environmental package, because this is very relevant to such studies
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Ticket overview

Ticket Summary Component Version Milestone Type Owner Status Created
#4 Additional category(s) of requirement? environmental packages 2.2 enhancement pyilmaz assigned 11/12/10
#63 definition of nucleic acid extraction and amplification MIxS general 5.0 enhancement pyilmaz assigned 09/10/14
#54 MIxS as RDF MIxS general 4.0 task pyilmaz, tuco new 03/26/13
#56 Versioning and management of MIxS as RDF MIxS general 4.0 task pyilmaz new 03/26/13
#57 Create classes for MIxS sections MIxS general 4.0 task pyilmaz new 03/26/13
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